![]() ![]() Khatri P, Sirota M, Butte AJ (2012) Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. Overview of existing pathway analysis methods using gene expression data as an example. Bioinformatics : doi: /bioinformatics/bti565 Copyright restrictions may apply.ġ9 Gene Lists Microarrays Protein arrays CHIP-chip SNP arrays RNA SeqĢ1 DAVID Tools Functional Annotation Clustering Chart – Term centricĢ5 Figure 1. A workflow is a convenient way to automate your own analysis pipeline or to distribute it to colleagues. A workflow consists of a series of tools in which the output of one tool is connected to and used as the input of another tool. CLC Genomics was acquired with funds provided by ORIED as well as participating groups of faculty that lobbied for its acquisition. This tutorial takes you through how to set up and run a workflow in the CLC Genomics Workbench. PLOS Computational Biology 8(2): eġ7 Cellular Component Biological Process Molecular Function GO Annotationġ8 Gene Ontology (GO) Levels of abstraction Getting Up and Running with CLC Genomics Workbench at NC State University Introduction: This resource guide is intended to help NC State users of CLC Genomics Workbench access and utilize this powerful software suite. Khatri P, Sirota M, Butte AJ (2012) Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. QIAGEN CLC Genomics Workbench is widely used for a variety of pipelines including but not limited to RNA-seq, single-cell RNA-seq, variant calling (SNPs, CNV, indels, etc. Overview of existing pathway analysis methods using gene expression data as an example. CLC Genomics Workbench 23.0.2 is for research purposes only. IPA Enriched Pathways, Functions, Diseases, Upstream Regulators Correlation Engine GEO Correlated Studies +ve and -ve DEX vs UNT DEGġ6 Figure 1. Learn How to … Draw Pathway Diagram : ePath3D, Chem Office, Search PPI Databases: BioGrid, STRING Search Gene Expression Databases: Correlation Engine Find Statistically Overrepresented Attribute Linked to Differentially Expressed Genes: IPA, DAVID,Įnrichment Analysis Deferentially Expressed Genes CLC Genomics Work Bench Ingenuity Pathway Analysis Functions Diseases Pathways RNA-Seq Reads Key Pathway Advisor Upstream Regulators Any Organism Volcano Plot PCA Plot Venn Diagram Heat Map Illumina BaseSpace Correlation Engine Correlated Expression Studies CLC BioMedical Work Bench Variant Detection Ingenuity Variant Analysis Human, Mouse and Rat Variant Annotation and Prioritization RNA-Seq Analysis Down Stream Analysisĩ RNA-Seq Workshop FASTq Reads CLC Genomics WorkBench ![]() Presentation on theme: "Pathway Informatics 16th August, 2017"- Presentation transcript:Īnsuman Chattopadhyay, PhD Molecular Biology Information Services Health Sciences Library System University of Pittsburghģ Software Search Gene Expression Databases: Correlation Engine CLC Genomics Workbench is software for analyzing and visualizing next generation sequencing data. ![]()
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